PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P06030_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 319aa    MW: 35383.4 Da    PI: 7.6021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P06030_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12111162155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  GSMUA_Achr2P06030_001 111 QRMTHIAVERNRRRQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 162
                            79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-13109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-12109166No hitNo description
PROSITE profilePS5088815.485110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-17110178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-10111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVNYMLSNPA PQTQISLDKL SFADVMQFAE LGPKLALHQS RAFGGTSLEN KAGMVAEEDG  60
EKKARSSENA SSVQHLHLVG ETEKAAAGVV EAKNRRKRPR ALKTSEEVES QRMTHIAVER  120
NRRRQMNEHL RVLRSLMPGS YVQRGDQASI IGGAIEFVRE LEQLLQCLES QKRRRLFGGG  180
EAPRPAMDAP PLPNQQPFYP PLPFPNADQV KILDIDPSGG GLREETAENK SCLADVEVRL  240
LGFDAMIKIL SRRRPGQLIK TIAALEDLQF AILHTNITTI EQTVLYSFNV KIASETRCTA  300
EDIANSVQQI LSFIDANTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111122RMTHIAVERNRR
2171175KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387118.10.0PREDICTED: transcription factor FAMA-like
SwissprotQ56YJ81e-117FAMA_ARATH; Transcription factor FAMA
TrEMBLM0S5J40.0M0S5J4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P06030_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95023340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-107bHLH family protein